If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ), 'gf_id' => 'HOM05D000982', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000982' ), 'data_identifier' => 'HOM05D000982', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000982', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '613', 'num_species' => '88' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p02920' => 'bna', 'A02p36110' => 'bna', 'A03p07010' => 'bna', 'A06p19890' => 'bna', 'A06p40310' => 'bna', 'A07p13170' => 'bna', 'A07p20120' => 'bna', 'A07p29380' => 'bna', 'A07p40300' => 'bna', 'A08p27660' => 'bna', 'A09p03810' => 'bna', 'A09p40370' => 'bna', 'A10p23690' => 'bna', 'Aa31LG11G14400' => 'aar', 'Aa31LG2G4360' => 'aar', 'Aa31LG4G4760' => 'aar', 'Aa31LG7G8190' => 'aar', 'Aa31LG9G16320' => 'aar', 'Actinidia02712' => 'ach', 'Actinidia04032' => 'ach', 'Actinidia04911' => 'ach', 'Actinidia06081' => 'ach', 'Actinidia08222' => 'ach', 'Actinidia17540' => 'ach', 'Actinidia19046' => 'ach', 'Actinidia19050' => 'ach', 'Actinidia34987' => 'ach', 'Actinidia34989' => 'ach', 'Actinidia36021' => 'ach', 'Actinidia37642' => 'ach', 'Ah.02g113310' => 'amhyb', 'Ah.11g048590' => 'amhyb', 'AL1G38600' => 'aly', 'AL2G34380' => 'aly', 'AL5G18620' => 'aly', 'AL6G25980' => 'aly', 'AL7G50380' => 'aly', 'Aqoxy3G00693' => 'aox', 'Aqoxy3G00702' => 'aox', 'Aqoxy3G03332' => 'aox', 'arahy.Tifrunner.gnm1.ann1.2031JR' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.29A50M' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.577H6Y' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F2Y5QJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HR6FN8' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.K0LJPP' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L1017I' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.LQAU3W' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NL7LZS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.PYSX12' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.WVIE7L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X18BMS' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.YX8FPP' => 'arhy', 'AT1G26945' => 'ath', 'AT1G74500' => 'ath', 'AT3G28857' => 'ath', 'AT3G47710' => 'ath', 'AT5G15160' => 'ath', 'AT5G39860' => 'ath', 'ATR0564G377' => 'atr', 'Atru.chr11.1829' => 'acertr', 'Atru.chr3.2785' => 'acertr', 'Atru.chr8.132' => 'acertr', 'Atru.chr9.2282' => 'acertr', 'Atru.chr9.2286' => 'acertr', 'AUR62008383' => 'cqu', 'AUR62021715' => 'cqu', 'AUR62021718' => 'cqu', 'BcaB01g00885' => 'bca', 'BcaB01g05075' => 'bca', 'BcaB01g05076' => 'bca', 'BcaB02g06955' => 'bca', 'BcaB02g07968' => 'bca', 'BcaB03g14097' => 'bca', 'BcaB04g19486' => 'bca', 'BcaB05g24857' => 'bca', 'BcaB07g30112' => 'bca', 'BcaB08g36920' => 'bca', 'BcaC01g01780' => 'bca', 'BcaC03g13425' => 'bca', 'BcaC03g17535' => 'bca', 'BcaC04g18978' => 'bca', 'BcaC04g23861' => 'bca', 'BcaC05g26367' => 'bca', 'BcaC06g30891' => 'bca', 'BcaC06g33646' => 'bca', 'BcaC06g35106' => 'bca', 'BcaC08g44435' => 'bca', 'BcaC08g46881' => 'bca', 'BcaC08g46991' => 'bca', 'BcaNung03326' => 'bca', 'BcaNung03327' => 'bca', 'BolC2t06688H' => 'bol', 'BolC2t11561H' => 'bol', 'BolC3t13296H' => 'bol', 'BolC3t19491H' => 'bol', 'BolC5t31136H' => 'bol', 'BolC6t37083H' => 'bol', 'BolC6t38440H' => 'bol', 'BolC6t39899H' => 'bol', 'BolC7t42489H' => 'bol', 'BolC7t44293H' => 'bol', 'BolC8t49903H' => 'bol', 'BolC9t53334H' => 'bol', 'BolC9t59036H' => 'bol', 'BraA02t06978Z' => 'bra', 'BraA02t08610Z' => 'bra', 'BraA03t10022Z' => 'bra', 'BraA06t25073Z' => 'bra', 'BraA06t26948Z' => 'bra', 'BraA07t29711Z' => 'bra', 'BraA07t30575Z' => 'bra', 'BraA07t31573Z' => 'bra', 'BraA08t34703Z' => 'bra', 'BraA09t36019Z' => 'bra', 'BraA09t39534Z' => 'bra', 'BraA10t44432Z' => 'bra', 'C02p07560' => 'bna', 'C02p31930' => 'bna', 'C02p55090' => 'bna', 'C03p07990' => 'bna', 'C03p71940' => 'bna', 'C06p18780' => 'bna', 'C06p33260' => 'bna', 'C06p48660' => 'bna', 'C07p19750' => 'bna', 'C07p37740' => 'bna', 'C08p22650' => 'bna', 'C09p04040' => 'bna', 'C09p61970' => 'bna', 'CAN.G1024.5' => 'can', 'CAN.G1305.12' => 'can', 'CAN.G206.140' => 'can', 'CAN.G628.28' => 'can', 'CAN.G685.11' => 'can', 'CANSAT64G1640' => 'cansat', 'CANSAT64G2268' => 'cansat', 'CANSAT80G1158' => 'cansat', 'CANSAT80G1459' => 'cansat', 'CARHR024960' => 'chi', 'CARHR067780' => 'chi', 'CARHR151860' => 'chi', 'CARHR156390' => 'chi', 'CARHR198150' => 'chi', 'CARHR262370' => 'chi', 'Carub.0001s2403' => 'cru', 'Carub.0002s2130' => 'cru', 'Carub.0005s0740' => 'cru', 'Carub.0005s1384' => 'cru', 'Carub.0006s1333' => 'cru', 'Carub.0007s3587' => 'cru', 'Ca_04764_v3' => 'car', 'Cc04_g17060' => 'ccan', 'Cc04_g17160' => 'ccan', 'Cc07_g03240' => 'ccan', 'Cc11_g13270' => 'ccan', 'CDE02G0872' => 'cde', 'CDE02G3333' => 'cde', 'CDE05G1856' => 'cde', 'CDE08G0411' => 'cde', 'CDE09G0480' => 'cde', 'Cfa009003' => 'cfa', 'Cfa018965' => 'cfa', 'Ciclev10013209m.g' => 'ccl', 'Ciclev10023072m.g' => 'ccl', 'Ciclev10024517m.g' => 'ccl', 'Ciclev10033182m.g' => 'ccl', 'CiPaw.03G028500' => 'cil', 'CiPaw.04G018200' => 'cil', 'CiPaw.05G137600' => 'cil', 'CiPaw.06G082800' => 'cil', 'CiPaw.11G041700' => 'cil', 'CiPaw.11G042100' => 'cil', 'CiPaw.12G014500' => 'cil', 'ClCG01G014490' => 'cla', 'ClCG04G012420' => 'cla', 'ClCG05G024430' => 'cla', 'ClCG06G016290' => 'cla', 'ClCG08G008910' => 'cla', 'ClCG09G018330' => 'cla', 'COL.COLO4_05126' => 'col', 'COL.COLO4_07693' => 'col', 'COL.COLO4_22978' => 'col', 'Cpa.g.c36549' => 'cpa', 'Cpa.g.sc14.15' => 'cpa', 'Cpa.g.sc183.32' => 'cpa', 'Cpa.g.sc388.7' => 'cpa', 'CsaV3_1G002240' => 'csa', 'CsaV3_1G005290' => 'csa', 'CsaV3_1G007820' => 'csa', 'CsaV3_5G032530' => 'csa', 'CsaV3_5G037950' => 'csa', 'CsaV3_6G036240' => 'csa', 'CSS0007517' => 'camsi', 'CSS0018262' => 'camsi', 'CSS0020192' => 'camsi', 'CSS0020435' => 'camsi', 'CSS0025155' => 'camsi', 'CSS0025885' => 'camsi', 'CSS0036815' => 'camsi', 'CSS0038436' => 'camsi', 'CSS0043016' => 'camsi', 'CSS0045502' => 'camsi', 'DCAR_007143' => 'dca', 'DCAR_011142' => 'dca', 'DCAR_021531' => 'dca', 'DCAR_026040' => 'dca', 'DCAR_026065' => 'dca', 'DCAR_027401' => 'dca', 'DCAR_031033' => 'dca', 'Dinv06530' => 'din', 'Dinv16626' => 'din', 'Dinv19934' => 'din', 'Dinv19940' => 'din', 'Dinv24974' => 'din', 'Dinv33744' => 'din', 'Dinv34172' => 'din', 'Dinv38687' => 'din', 'Dinv38688' => 'din', 'Duzib068G0541' => 'dzi', 'Duzib068G1204' => 'dzi', 'Duzib084G0136' => 'dzi', 'Duzib084G0153' => 'dzi', 'Duzib084G0198' => 'dzi', 'Duzib084G0371' => 'dzi', 'Duzib147G1279' => 'dzi', 'Duzib187G0155' => 'dzi', 'Duzib205G1100' => 'dzi', 'Duzib248G1653' => 'dzi', 'Duzib251G0097' => 'dzi', 'Duzib264G1302' => 'dzi', 'Duzib268G0786' => 'dzi', 'ECA238G3707' => 'eca', 'ECA246G0444' => 'eca', 'ECA246G0558' => 'eca', 'ECA246G2914' => 'eca', 'ECA246G3585' => 'eca', 'EL10Ac2g02965' => 'bvu', 'EL10Ac5g10968' => 'bvu', 'EL10Ac5g10974' => 'bvu', 'EL10Ac5g10975' => 'bvu', 'EL10Ac6g14042' => 'bvu', 'Eucgr.B03420' => 'egr', 'Eucgr.G02519' => 'egr', 'Eucgr.I01936' => 'egr', 'Eucgr.J01215' => 'egr', 'Eucgr.K02464' => 'egr', 'Eucgr.K02466' => 'egr', 'FAN02G4261' => 'fan', 'FAN04G1621' => 'fan', 'FAN04G1666' => 'fan', 'FAN05G5397' => 'fan', 'FAN07G1848' => 'fan', 'FAN08G0869' => 'fan', 'FAN08G3111' => 'fan', 'FAN09G1220' => 'fan', 'FAN12G0918' => 'fan', 'FAN13G1475' => 'fan', 'FAN13G1768' => 'fan', 'FAN14G4489' => 'fan', 'FAN17G2148' => 'fan', 'FAN18G2013' => 'fan', 'FAN18G3587' => 'fan', 'FAN21G3084' => 'fan', 'FAN22G2317' => 'fan', 'FvH4_3g04290' => 'fve', 'FvH4_4g31600' => 'fve', 'FvH4_5g15220' => 'fve', 'FvH4_5g15240' => 'fve', 'FvH4_6g48970' => 'fve', 'Glyma.01G044800' => 'gma', 'Glyma.02G018900' => 'gma', 'Glyma.04G171600' => 'gma', 'Glyma.04G172500' => 'gma', 'Glyma.06G191800' => 'gma', 'Glyma.06G192300' => 'gma', 'Glyma.08G298700' => 'gma', 'Glyma.08G356900' => 'gma', 'Glyma.09G239100' => 'gma', 'Glyma.13G063800' => 'gma', 'Glyma.18G123100' => 'gma', 'Glyma.18G258700' => 'gma', 'Glyma.19G021400' => 'gma', 'Gohir.A03G065500' => 'ghi', 'Gohir.A03G099600' => 'ghi', 'Gohir.A05G305100' => 'ghi', 'Gohir.A05G365000' => 'ghi', 'Gohir.A07G214900' => 'ghi', 'Gohir.A09G019100' => 'ghi', 'Gohir.A11G029981' => 'ghi', 'Gohir.A11G030161' => 'ghi', 'Gohir.A12G165800' => 'ghi', 'Gohir.A12G176300' => 'ghi', 'Gohir.A13G073000' => 'ghi', 'Gohir.D02G124500' => 'ghi', 'Gohir.D03G091800' => 'ghi', 'Gohir.D04G049800' => 'ghi', 'Gohir.D05G304400' => 'ghi', 'Gohir.D07G221900' => 'ghi', 'Gohir.D09G018500' => 'ghi', 'Gohir.D11G033400' => 'ghi', 'Gohir.D11G033500' => 'ghi', 'Gohir.D12G169200' => 'ghi', 'Gohir.D12G179220' => 'ghi', 'Gohir.D13G073000' => 'ghi', 'Gorai.001G256200' => 'gra', 'Gorai.003G095400' => 'gra', 'Gorai.005G139900' => 'gra', 'Gorai.006G021800' => 'gra', 'Gorai.007G036200' => 'gra', 'Gorai.007G036300' => 'gra', 'Gorai.008G181800' => 'gra', 'Gorai.008G192000' => 'gra', 'Gorai.009G324000' => 'gra', 'Gorai.012G055200' => 'gra', 'Gorai.013G083800' => 'gra', 'GSVIVG01008030001' => 'vvi', 'GSVIVG01008034001' => 'vvi', 'GSVIVG01011380001' => 'vvi', 'GSVIVG01020027001' => 'vvi', 'HanXRQChr02g0040991' => 'han', 'HanXRQChr02g0041001' => 'han', 'HanXRQChr02g0056351' => 'han', 'HanXRQChr04g0127551' => 'han', 'HanXRQChr05g0158031' => 'han', 'HanXRQChr09g0263211' => 'han', 'HanXRQChr10g0290321' => 'han', 'HanXRQChr14g0449871' => 'han', 'HanXRQChr15g0474071' => 'han', 'HanXRQChr15g0487871' => 'han', 'HanXRQChr16g0504941' => 'han', 'HanXRQChr17g0545171' => 'han', 'HanXRQChr17g0547671' => 'han', 'Haze_07347' => 'cav', 'Haze_07350' => 'cav', 'Haze_14555' => 'cav', 'Hma1.2p1_0265F.1_g106640' => 'hma', 'Hma1.2p1_0449F.1_g155350' => 'hma', 'Hma1.2p1_0598F.1_g186770' => 'hma', 'HPP92_002345' => 'vpl', 'HPP92_004325' => 'vpl', 'HPP92_011242' => 'vpl', 'HPP92_011347' => 'vpl', 'HPP92_013070' => 'vpl', 'HPP92_016479' => 'vpl', 'HPP92_016854' => 'vpl', 'Hund05895' => 'sun', 'Hund09360' => 'sun', 'Hund25257' => 'sun', 'Lalb_Chr01g0022471' => 'lal', 'Lalb_Chr02g0159641' => 'lal', 'Lalb_Chr03g0041941' => 'lal', 'Lalb_Chr06g0175411' => 'lal', 'Lalb_Chr07g0177941' => 'lal', 'Lalb_Chr10g0098151' => 'lal', 'Lalb_Chr13g0303321' => 'lal', 'Lalb_Chr17g0340531' => 'lal', 'Lalb_Chr19g0125491' => 'lal', 'Lalb_Chr21g0318881' => 'lal', 'Lj1g0008378' => 'lja', 'Lj1g0009727' => 'lja', 'Lj2g0005065' => 'lja', 'Lj2g0005910' => 'lja', 'Lsat_1_v5_gn_1_13141' => 'lsa', 'Lsat_1_v5_gn_2_88961' => 'lsa', 'Lsat_1_v5_gn_3_100601' => 'lsa', 'Lsat_1_v5_gn_3_50900' => 'lsa', 'Lsat_1_v5_gn_4_177861' => 'lsa', 'Lsat_1_v5_gn_5_18801' => 'lsa', 'Lsat_1_v5_gn_5_18860' => 'lsa', 'Lsat_1_v5_gn_8_52080' => 'lsa', 'Manes.01G187700' => 'mes', 'Manes.05G099100' => 'mes', 'Manes.06G094500' => 'mes', 'Manes.06G094700' => 'mes', 'Manes.14G076300' => 'mes', 'Manes.14G076600' => 'mes', 'Manes.15G177200' => 'mes', 'Manes.17G023400' => 'mes', 'MBI02_g14491_MAGBIO' => 'mbi', 'MBI02_g18321_MAGBIO' => 'mbi', 'MBI02_g33379_MAGBIO' => 'mbi', 'MBI02_g41890_MAGBIO' => 'mbi', 'MBI02_g41891_MAGBIO' => 'mbi', 'MBI02_g46986_MAGBIO' => 'mbi', 'MBI05_g00387_MAGBIO' => 'mbi', 'MD00G1186500' => 'mdo', 'MD06G1190200' => 'mdo', 'MD06G1190900' => 'mdo', 'MD09G1049300' => 'mdo', 'MD13G1074300' => 'mdo', 'MD14G1197100' => 'mdo', 'MD14G1197600' => 'mdo', 'MD16G1075700' => 'mdo', 'MD17G1049300' => 'mdo', 'Medtr3g438070' => 'mtr', 'Medtr5g039180' => 'mtr', 'Medtr6g011670' => 'mtr', 'Medtr7g010120' => 'mtr', 'Medtr7g059260' => 'mtr', 'MELO3C001968.2' => 'cme', 'MELO3C002197.2' => 'cme', 'MELO3C012081.2' => 'cme', 'MELO3C017164.2' => 'cme', 'MELO3C021981.2' => 'cme', 'MELO3C027290.2' => 'cme', 'Migut.C00273' => 'egut', 'Migut.D01841' => 'egut', 'Migut.D01842' => 'egut', 'Migut.E00107' => 'egut', 'Migut.K01326' => 'egut', 'Migut.L01316' => 'egut', 'MSTRG.4416' => 'ama', 'MSTRG.7815' => 'ama', 'Nitab4.5_0000026g0190' => 'nta', 'Nitab4.5_0000269g0070' => 'nta', 'Nitab4.5_0000274g0130' => 'nta', 'Nitab4.5_0000417g0010' => 'nta', 'Nitab4.5_0000564g0130' => 'nta', 'Nitab4.5_0000741g0050' => 'nta', 'Nitab4.5_0000785g0050' => 'nta', 'Nitab4.5_0000785g0090' => 'nta', 'Nitab4.5_0000984g0070' => 'nta', 'Nitab4.5_0001174g0030' => 'nta', 'Nitab4.5_0001188g0010' => 'nta', 'Nitab4.5_0002151g0050' => 'nta', 'Nitab4.5_0003797g0010' => 'nta', 'Nitab4.5_0004429g0010' => 'nta', 'Nitab4.5_0004436g0030' => 'nta', 'Nitab4.5_0008426g0010' => 'nta', 'Nitab4.5_0010010g0040' => 'nta', 'Nitab4.5_0012433g0010' => 'nta', 'Nn3g17177' => 'nnu', 'Nn3g17190' => 'nnu', 'Nn4g23097' => 'nnu', 'Oeu006487.1' => 'oeu', 'Oeu006491.1' => 'oeu', 'Oeu045412.1' => 'oeu', 'Oeu054905.1' => 'oeu', 'Oeu060790.1' => 'oeu', 'Oeu060792.1' => 'oeu', 'Oeu060936.1' => 'oeu', 'Oeu062118.1' => 'oeu', 'Os02g0747900' => 'osa', 'Os03g0171300' => 'osa', 'Os03g0171700' => 'osa', 'Os04g0641700' => 'osa', 'Os06g0226500' => 'osa', 'Os10g0403800' => 'osa', 'Os10g0404300' => 'osa', 'Os11g0603000' => 'osa', 'Peaxi162Scf00009g00111' => 'pax', 'Peaxi162Scf00009g00216' => 'pax', 'Peaxi162Scf00129g00321' => 'pax', 'Peaxi162Scf00267g00138' => 'pax', 'Peaxi162Scf00267g00139' => 'pax', 'Peaxi162Scf00451g00816' => 'pax', 'Peaxi162Scf00503g00417' => 'pax', 'Peaxi162Scf00574g00008' => 'pax', 'Peaxi162Scf01289g00011' => 'pax', 'PGR044G0948' => 'pgr', 'PGR044G1076' => 'pgr', 'PGR083G0525' => 'pgr', 'PGR083G1343' => 'pgr', 'PGR102G1015' => 'pgr', 'PGR119G1279' => 'pgr', 'PGR142G0391' => 'pgr', 'PGSC0003DMG400001418' => 'stu', 'PGSC0003DMG400002859' => 'stu', 'PGSC0003DMG400003398' => 'stu', 'PGSC0003DMG400006893' => 'stu', 'PGSC0003DMG400023056' => 'stu', 'Phvul.002G088400' => 'pvu', 'Phvul.003G067500' => 'pvu', 'Phvul.004G027700' => 'pvu', 'Phvul.008G041800' => 'pvu', 'Phvul.008G122600' => 'pvu', 'Phvul.009G188800' => 'pvu', 'Phvul.009G189200' => 'pvu', 'Potri.004G128400' => 'ptr', 'Potri.012G069500' => 'ptr', 'Potri.015G063300' => 'ptr', 'Potri.017G081300' => 'ptr', 'Prupe.1G271700' => 'ppe', 'Prupe.3G269500' => 'ppe', 'Prupe.5G189300' => 'ppe', 'Prupe.5G189600' => 'ppe', 'Psat1g074120' => 'psa', 'Psat2g123120' => 'psa', 'Psat3g143280' => 'psa', 'Psat3g196840' => 'psa', 'Psat4g138160' => 'psa', 'Psat5g183080' => 'psa', 'PSO017G0397' => 'pso', 'PSO017G6707' => 'pso', 'PSO063G7435' => 'pso', 'PSO478G2165' => 'pso', 'PSO832G3343' => 'pso', 'QL02p081485' => 'qlo', 'QL02p081532' => 'qlo', 'QL03p064849' => 'qlo', 'QL10p016180' => 'qlo', 'QL10p016274' => 'qlo', 'RcHm_v2.0_Chr2g0168811' => 'rch', 'RcHm_v2.0_Chr4g0440111' => 'rch', 'RcHm_v2.0_Chr7g0180851' => 'rch', 'RcHm_v2.0_Chr7g0180941' => 'rch', 'Rhsim08G0068400' => 'rsi', 'Rhsim08G0157500' => 'rsi', 'Rhsim10G0040900' => 'rsi', 'Rhsim12G0061200' => 'rsi', 'Sabra04G0090400' => 'sbr', 'Sabra12G0049500' => 'sbr', 'Sabra15G0088500' => 'sbr', 'Sabra17G0072500' => 'sbr', 'SalBow2G1979' => 'sbo', 'SalBow5G1196' => 'sbo', 'SalBow5G5037' => 'sbo', 'SalBow7G1993' => 'sbo', 'Sc04g0002520' => 'sci', 'Sc10g0003720' => 'sci', 'Sc10g0009950' => 'sci', 'Sc11g0001780' => 'sci', 'Sc14g0008300' => 'sci', 'Sed0008447' => 'sed', 'Sed0011093' => 'sed', 'Sed0011941' => 'sed', 'Sed0014555' => 'sed', 'Sed0017506' => 'sed', 'Sed0021323' => 'sed', 'Sed0022319' => 'sed', 'Sed0022879' => 'sed', 'Sed0026086' => 'sed', 'Sed0027028' => 'sed', 'Solyc02g087860.3' => 'sly', 'Solyc03g112995.1' => 'sly', 'Solyc04g005660.4' => 'sly', 'Solyc05g007210.2' => 'sly', 'Sopen02g016520' => 'spe', 'Sopen02g032580' => 'spe', 'Sopen03g032060' => 'spe', 'Sopen04g001710' => 'spe', 'Sopen05g003170' => 'spe', 'Sopen06g027190' => 'spe', 'Sp1g21830' => 'spa', 'Sp2g17480' => 'spa', 'Sp5g14210' => 'spa', 'Sp5g29680' => 'spa', 'Sp6g28910' => 'spa', 'Sp7g02200' => 'spa', 'TAR371G0366' => 'tar', 'TAR371G0797' => 'tar', 'TAR374G1338' => 'tar', 'TAR622G0229' => 'tar', 'TAR629G0461' => 'tar', 'TAR629G0914' => 'tar', 'TAR629G2086' => 'tar', 'THA.LOC104805458' => 'tha', 'THA.LOC104808025' => 'tha', 'THA.LOC104813879' => 'tha', 'THA.LOC104819438' => 'tha', 'THA.LOC104821038' => 'tha', 'THA.LOC104821428' => 'tha', 'THA.LOC104822107' => 'tha', 'THA.LOC104822365' => 'tha', 'THA.LOC104822923' => 'tha', 'Thecc.02G348900' => 'tca', 'Thecc.03G082700' => 'tca', 'Thecc.03G083300' => 'tca', 'Thecc.04G079000' => 'tca', 'Thhalv10005197m.g' => 'esa', 'Thhalv10009197m.g' => 'esa', 'Thhalv10010858m.g' => 'esa', 'Thhalv10015131m.g' => 'esa', 'Thhalv10019683m.g' => 'esa', 'Thhalv10028074m.g' => 'esa', 'TPR.G11698' => 'tpr', 'TPR.G11878' => 'tpr', 'TPR.G15013' => 'tpr', 'TPR.G23254' => 'tpr', 'TPR.G28030' => 'tpr', 'TPR.G33290' => 'tpr', 'TWI15G0082' => 'twi', 'TWI15G0660' => 'twi', 'TWI32G0251' => 'twi', 'TWI32G1298' => 'twi', 'TWI34G0651' => 'twi', 'TWI60G0447' => 'twi', 'TWI60G1435' => 'twi', 'TWI75G0447' => 'twi', 'unitig_0.g1805' => 'ugi', 'unitig_22.g6525' => 'ugi', 'unitig_22.g6914' => 'ugi', 'unitig_26.g10308' => 'ugi', 'unitig_52.g17580' => 'ugi', 'unitig_62.g23463' => 'ugi', 'unitig_699.g19918' => 'ugi', 'unitig_747.g21174' => 'ugi', 'unitig_749.g13236' => 'ugi', 'unitig_899.g15513' => 'ugi', 'vmacro01239' => 'vma', 'vmacro16557' => 'vma', 'vmacro17560' => 'vma', 'vmacro18200' => 'vma', 'VMungo1309G1454' => 'vmu', 'VMungo1383G3425' => 'vmu', 'Zm00001eb005500' => 'zma', 'Zm00001eb005540' => 'zma', 'Zm00001eb068900' => 'zma', 'Zm00001eb254900' => 'zma', 'Zm00001eb372510' => 'zma', 'Zm00001eb402170' => 'zma', 'Zm00001eb431920' => 'zma' ) $gf_id = 'HOM05D000982' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000982' ) $data_identifier = 'HOM05D000982' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 26, 'aar' => (int) 5, 'ach' => (int) 12, 'amhyb' => (int) 2, 'aly' => (int) 5, 'aox' => (int) 3, 'arhy' => (int) 13, 'ath' => (int) 6, 'atr' => (int) 1, 'acertr' => (int) 5, 'cqu' => (int) 3, 'bca' => (int) 24, 'bol' => (int) 13, 'bra' => (int) 12, 'can' => (int) 5, 'cansat' => (int) 4, 'chi' => (int) 6, 'cru' => (int) 6, 'car' => (int) 1, 'ccan' => (int) 4, 'cde' => (int) 5, 'cfa' => (int) 2, 'ccl' => (int) 4, 'cil' => (int) 7, 'cla' => (int) 6, 'col' => (int) 3, 'cpa' => (int) 4, 'csa' => (int) 6, 'camsi' => (int) 10, 'dca' => (int) 7, 'din' => (int) 9, 'dzi' => (int) 13, 'eca' => (int) 5, 'bvu' => (int) 5, 'egr' => (int) 6, 'fan' => (int) 17, 'fve' => (int) 5, 'gma' => (int) 13, 'ghi' => (int) 22, 'gra' => (int) 11, 'vvi' => (int) 4, 'han' => (int) 13, 'cav' => (int) 3, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 10, 'lja' => (int) 4, 'lsa' => (int) 8, 'mes' => (int) 8, 'mbi' => (int) 7, 'mdo' => (int) 9, 'mtr' => (int) 5, 'cme' => (int) 6, 'egut' => (int) 6, 'ama' => (int) 2, 'nta' => (int) 18, 'nnu' => (int) 3, 'oeu' => (int) 8, 'osa' => (int) 8, 'pax' => (int) 9, 'pgr' => (int) 7, 'stu' => (int) 5, 'pvu' => (int) 7, 'ptr' => (int) 4, 'ppe' => (int) 4, 'psa' => (int) 6, 'pso' => (int) 5, 'qlo' => (int) 5, 'rch' => (int) 4, 'rsi' => (int) 4, 'sbr' => (int) 4, 'sbo' => (int) 4, 'sci' => (int) 5, 'sed' => (int) 10, 'sly' => (int) 4, 'spe' => (int) 6, 'spa' => (int) 6, 'tar' => (int) 7, 'tha' => (int) 9, 'tca' => (int) 4, 'esa' => (int) 6, 'tpr' => (int) 6, 'twi' => (int) 8, 'ugi' => (int) 10, 'vma' => (int) 4, 'vmu' => (int) 2, 'zma' => (int) 7 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb431920' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1